Determines the overlap of chosen genes between nearest neighbour cells. It works faster on sparse matrix than on dense matrix.

Determines how many genes are shared (have an edge) between neighbouring cells for all cells in the dataset.

Usage

determine_overlap(cg_adj, cc_adj)

Arguments

cg_adj

cell-gene adjacency matrix

cc_adj

cell-cell adjacency matrix

Value

Matrix (cells x genes) showing the overlap of each gene between the nearest neighbour cells.