plot biMAP with gene expression

Usage

feature_biMAP(
  sce,
  caclust,
  feature,
  color_cells_by = "expression",
  assay = "logcounts",
  gene_alpha = 0.5,
  cell_alpha = 0.8,
  gene_size = 1,
  cell_size = 1,
  label_size = 4
)

Arguments

sce: SinleCellExperiment object
caclust: caclust object
feature: character. Name of gene to visualize
color_cells_by: character. Default: expression
assay: character. Name of assay in SingleCellExperiment used for visualization.
gene_alpha: numeric. The transparent value of gene points.
cell_alpha: numeric. The transparent value of cell points.
gene_size: numeric. The size of gene points.
cell_size: numeric. The size of cell points.
label_size: numeric. Size of the text label.