BiMAP visualization of feature expression.

Usage

plot_feature_biMAP(
  sce,
  caclust = NULL,
  feature,
  color_cells_by = "expression",
  assay = "logcounts",
  ...
)

# S4 method for SingleCellExperiment,caclust
plot_feature_biMAP(
  sce,
  caclust = NULL,
  feature,
  color_cells_by = "expression",
  assay = "logcounts",
  ...
)

# S4 method for SingleCellExperiment,ANY
plot_feature_biMAP(
  sce,
  caclust = NULL,
  feature,
  color_cells_by = "expression",
  assay = "logcounts",
  ...,
  caclust_meta_name = "caclust"
)

Arguments

sce: SinleCellExperiment object
caclust: caclust object with bimap slot or NULL
feature: character. Name of gene to visualize
color_cells_by: character. Default: expression
assay: character. Name of assay in SingleCellExperiment used for visualization.
...: Further arguments
caclust_meta_name: Name under which the caclust object is stored in the metadata of the SingleCellExperiment object.

Value

ggplot object