Plot continous or categorical data as a biMAP

Plot continous or categorical data as a biMAP

Usage

plot_metadata_biMAP(obj, color_cells_by, ...)

# S4 method for caclust
plot_metadata_biMAP(obj, color_cells_by, ..., meta_df)

# S4 method for SingleCellExperiment
plot_metadata_biMAP(obj, color_cells_by, ..., caclust_meta_name = "caclust")

Arguments

obj

caclust or SingleCellExperiment object.

color_cells_by

coloumn name in meta_df

...

Further arguments.

meta_df

data.frame with column specified by color_cells_by with cell names as rownames (e.g. colData() from SingleCellExperiment object)

caclust_meta_name

Name under which the caclust object is stored in the metadata of the SingleCellExperiment object.

Value

ggplot of metadata biMAP